Hi,
Thank you for developing such an awesome tool, and all of the associated tutorials and examples that exist around it! They have made the learning and experimentation process with nbdev very fun.
I’m posting about a situation that I haven’t been able to resolve on my own, and while I’ve seen related forum posts and github issues, I haven’t seen any that have helped me fix this specific issue. My problem appears similar to other posts where github actions fail, especially this thread but the suggested fixes haven’t worked in my case. Also potentially similar to this but I can’t pinpoint which package is causing the error. I’m having a hard time identifying the root cause of the error, though maybe I am also misunderstanding the error report.
Problem
I’m using nbdev to develop a project here. When I push changes to the github repo, the CI action fails with essentially the same error every time, and despite making changes to my files, I haven’t been able to change the error code, which makes me think I’m not understanding the actual source of the error. I am able to generate the docs locally.
Error report
Below is the full error report and I have also linked it here
Run fastai/workflows/nbdev-ci@master Run actions/checkout@v3 Syncing repository: e-marshall/ITS_LIVE_TOOL Getting Git version info Temporarily overriding HOME='/home/runner/work/_temp/4d84e05b-256e-4b23-aba5-122cadf505f1' before making global git config changes Adding repository directory to the temporary git global config as a safe directory /usr/bin/git config --global --add safe.directory /home/runner/work/ITS_LIVE_TOOL/ITS_LIVE_TOOL Deleting the contents of '/home/runner/work/ITS_LIVE_TOOL/ITS_LIVE_TOOL' Initializing the repository Disabling automatic garbage collection Setting up auth Fetching the repository Determining the checkout info Checking out the ref /usr/bin/git log -1 --format='%H' 'd15d34e8db74f61f75be7f5f0552224b6d01776a' Run actions/setup-python@v4 Installed versions /opt/hostedtoolcache/Python/3.9.18/x64/bin/pip cache dir /home/runner/.cache/pip pip cache is not found Run set -ux + python -m pip install --upgrade pip Requirement already satisfied: pip in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (23.0.1) Collecting pip Downloading pip-23.3.1-py3-none-any.whl.metadata (3.5 kB) Downloading pip-23.3.1-py3-none-any.whl (2.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 12.2 MB/s eta 0:00:00 Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 23.0.1 Uninstalling pip-23.0.1: Successfully uninstalled pip-23.0.1 Successfully installed pip-23.3.1 + '[' ']' + pip install -U nbdev Collecting nbdev Downloading nbdev-2.3.13-py3-none-any.whl.metadata (10 kB) Collecting ipywidgets<=8.0.4 (from nbdev) Downloading ipywidgets-8.0.4-py3-none-any.whl (137 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 137.8/137.8 kB 5.1 MB/s eta 0:00:00 Collecting fastcore>=1.5.27 (from nbdev) Downloading fastcore-1.5.29-py3-none-any.whl (67 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 67.6/67.6 kB 8.4 MB/s eta 0:00:00 Collecting execnb>=0.1.4 (from nbdev) Downloading execnb-0.1.5-py3-none-any.whl (13 kB) Collecting astunparse (from nbdev) Downloading astunparse-1.6.3-py2.py3-none-any.whl (12 kB) Collecting ghapi>=1.0.3 (from nbdev) Downloading ghapi-1.0.4-py3-none-any.whl.metadata (13 kB) Collecting watchdog (from nbdev) Downloading watchdog-3.0.0-py3-none-manylinux2014_x86_64.whl (82 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 82.1/82.1 kB 6.6 MB/s eta 0:00:00 Collecting asttokens (from nbdev) Downloading asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB) Collecting PyYAML (from nbdev) Downloading PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting ipython (from execnb>=0.1.4->nbdev) Downloading ipython-8.17.2-py3-none-any.whl.metadata (6.0 kB) Requirement already satisfied: pip in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from fastcore>=1.5.27->nbdev) (23.3.1) Collecting packaging (from fastcore>=1.5.27->nbdev) Downloading packaging-23.2-py3-none-any.whl.metadata (3.2 kB) Collecting ipykernel>=4.5.1 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typing_extensions-4.8.0-py3-none-any.whl (31 kB) Downloading executing-2.0.1-py2.py3-none-any.whl (24 kB) Downloading importlib_metadata-6.8.0-py3-none-any.whl (22 kB) Downloading platformdirs-4.0.0-py3-none-any.whl (17 kB) Downloading wcwidth-0.2.10-py2.py3-none-any.whl (105 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 105.2/105.2 kB 29.0 MB/s eta 0:00:00 Downloading zipp-3.17.0-py3-none-any.whl (7.4 kB) Installing collected packages: wcwidth, pure-eval, ptyprocess, zipp, widgetsnbextension, wheel, watchdog, typing-extensions, traitlets, tornado, six, pyzmq, PyYAML, pygments, psutil, prompt-toolkit, platformdirs, pexpect, parso, packaging, nest-asyncio, jupyterlab-widgets, executing, exceptiongroup, decorator, debugpy, python-dateutil, matplotlib-inline, jupyter-core, jedi, importlib-metadata, fastcore, comm, astunparse, asttokens, stack-data, jupyter-client, ghapi, ipython, ipykernel, execnb, ipywidgets, nbdev Successfully installed PyYAML-6.0.1 asttokens-2.4.1 astunparse-1.6.3 comm-0.2.0 debugpy-1.8.0 decorator-5.1.1 exceptiongroup-1.1.3 execnb-0.1.5 executing-2.0.1 fastcore-1.5.29 ghapi-1.0.4 importlib-metadata-6.8.0 ipykernel-6.26.0 ipython-8.17.2 ipywidgets-8.0.4 jedi-0.19.1 jupyter-client-8.6.0 jupyter-core-5.5.0 jupyterlab-widgets-3.0.9 matplotlib-inline-0.1.6 nbdev-2.3.13 nest-asyncio-1.5.8 packaging-23.2 parso-0.8.3 pexpect-4.8.0 platformdirs-4.0.0 prompt-toolkit-3.0.41 psutil-5.9.6 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.16.1 python-dateutil-2.8.2 pyzmq-25.1.1 six-1.16.0 stack-data-0.6.3 tornado-6.3.3 traitlets-5.13.0 typing-extensions-4.8.0 watchdog-3.0.0 wcwidth-0.2.10 wheel-0.41.3 widgetsnbextension-4.0.9 zipp-3.17.0 + echo 'Doing editable install...' Doing editable install... + '[' true ']' + test -f setup.py + pip install -e '.[dev]' --extra-index-url https://download.pytorch.org/whl/cpu Looking in indexes: https://pypi.org/simple, https://download.pytorch.org/whl/cpu Obtaining file:///home/runner/work/ITS_LIVE_TOOL/ITS_LIVE_TOOL Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: fastcore in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (1.5.29) Collecting pandas Downloading pandas-2.1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB) Collecting geopandas Downloading geopandas-0.14.1-py3-none-any.whl.metadata (1.5 kB) Collecting xarray Downloading xarray-2023.10.1-py3-none-any.whl.metadata (10 kB) Requirement already satisfied: pip in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from fastcore) (23.3.1) Requirement already satisfied: packaging in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from fastcore) (23.2) Collecting fiona>=1.8.21 (from geopandas) Downloading fiona-1.9.5-cp39-cp39-manylinux2014_x86_64.whl.metadata (49 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 49.7/49.7 kB 4.3 MB/s eta 0:00:00 Collecting pyproj>=3.3.0 (from geopandas) Downloading pyproj-3.6.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (31 kB) Collecting shapely>=1.8.0 (from geopandas) Downloading shapely-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.0 kB) Collecting numpy<2,>=1.22.4 (from pandas) Downloading numpy-1.26.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 kB 14.6 MB/s eta 0:00:00 Requirement already satisfied: python-dateutil>=2.8.2 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from pandas) (2.8.2) Collecting pytz>=2020.1 (from pandas) Downloading pytz-2023.3.post1-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.1 (from pandas) Downloading tzdata-2023.3-py2.py3-none-any.whl (341 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 341.8/341.8 kB 25.2 MB/s eta 0:00:00 Collecting attrs>=19.2.0 (from fiona>=1.8.21->geopandas) Downloading attrs-23.1.0-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 kB 18.6 MB/s eta 0:00:00 Collecting certifi (from fiona>=1.8.21->geopandas) Downloading certifi-2023.7.22-py3-none-any.whl.metadata (2.2 kB) Collecting click~=8.0 (from fiona>=1.8.21->geopandas) Downloading click-8.1.7-py3-none-any.whl.metadata (3.0 kB) Collecting click-plugins>=1.0 (from fiona>=1.8.21->geopandas) Downloading click_plugins-1.1.1-py2.py3-none-any.whl (7.5 kB) Collecting cligj>=0.5 (from fiona>=1.8.21->geopandas) Downloading cligj-0.7.2-py3-none-any.whl (7.1 kB) Requirement already satisfied: six in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from fiona>=1.8.21->geopandas) (1.16.0) Requirement already satisfied: setuptools in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from fiona>=1.8.21->geopandas) (58.1.0) Requirement already satisfied: importlib-metadata in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from fiona>=1.8.21->geopandas) (6.8.0) Requirement already satisfied: zipp>=0.5 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from importlib-metadata->fiona>=1.8.21->geopandas) (3.17.0) Downloading geopandas-0.14.1-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 71.3 MB/s eta 0:00:00 Downloading pandas-2.1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.3/12.3 MB 105.1 MB/s eta 0:00:00 Downloading xarray-2023.10.1-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 74.9 MB/s eta 0:00:00 Downloading fiona-1.9.5-cp39-cp39-manylinux2014_x86_64.whl (15.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 15.7/15.7 MB 99.4 MB/s eta 0:00:00 Downloading numpy-1.26.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 85.9 MB/s eta 0:00:00 Downloading pyproj-3.6.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.3/8.3 MB 105.0 MB/s eta 0:00:00 Downloading pytz-2023.3.post1-py2.py3-none-any.whl (502 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 502.5/502.5 kB 63.3 MB/s eta 0:00:00 Downloading shapely-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.5/2.5 MB 96.1 MB/s eta 0:00:00 Downloading click-8.1.7-py3-none-any.whl (97 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 97.9/97.9 kB 25.8 MB/s eta 0:00:00 Downloading certifi-2023.7.22-py3-none-any.whl (158 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 158.3/158.3 kB 39.5 MB/s eta 0:00:00 Installing collected packages: pytz, tzdata, numpy, click, certifi, attrs, shapely, pyproj, pandas, cligj, click-plugins, xarray, fiona, geopandas, ITS-LIVE-TOOL Running setup.py develop for ITS-LIVE-TOOL Successfully installed ITS-LIVE-TOOL-0.0.1 attrs-23.1.0 certifi-2023.7.22 click-8.1.7 click-plugins-1.1.1 cligj-0.7.2 fiona-1.9.5 geopandas-0.14.1 numpy-1.26.2 pandas-2.1.3 pyproj-3.6.1 pytz-2023.3.post1 shapely-2.0.2 tzdata-2023.3 xarray-2023.10.1 + echo 'Check we are starting with clean git checkout' Check we are starting with clean git checkout ++ git status --porcelain -uno + [[ -n '' ]] + echo 'Trying to strip out notebooks' + nbdev_clean Trying to strip out notebooks Check that strip out was unnecessary + echo 'Check that strip out was unnecessary' + git status -s M nbs/04_inversion.ipynb M nbs/04a_inversion-oo.ipynb M nbs/06_GPregression.ipynb ?? ITS_LIVE_TOOL.egg-info/ ++ git status --porcelain -uno + [[ -n M nbs/04_inversion.ipynb M nbs/04a_inversion-oo.ipynb M nbs/06_GPregression.ipynb ]] + git status -uno On branch actions_setpu Your branch is up to date with 'origin/actions_setpu'. Changes not staged for commit: (use "git add <file>..." to update what will be committed) + echo -e '!!! Detected unstripped out notebooks\n!!!Remember to run nbdev_install_hooks' ++ pip install -U nbdev (use "git restore <file>..." to discard changes in working directory) modified: nbs/04_inversion.ipynb modified: nbs/04a_inversion-oo.ipynb modified: nbs/06_GPregression.ipynb no changes added to commit (use "git add" and/or "git commit -a") !!! Detected unstripped out notebooks !!!Remember to run nbdev_install_hooks + echo -e 'This error can also happen if you are using an older version of nbdev relative to what is in CI. Please try to upgrade nbdev with the command Requirement already satisfied: nbdev in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (2.3.13) This error can also happen if you are using an older version of nbdev relative to what is in CI. Please try to upgrade nbdev with the command Requirement already satisfied: nbdev in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (2.3.13) Requirement already satisfied: ipywidgets<=8.0.4 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (8.0.4) Requirement already satisfied: fastcore>=1.5.27 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (1.5.29) Requirement already satisfied: execnb>=0.1.4 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (0.1.5) Requirement already satisfied: astunparse in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (1.6.3) Requirement already satisfied: ghapi>=1.0.3 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (1.0.4) Requirement already satisfied: watchdog in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (3.0.0) Requirement already satisfied: asttokens in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (2.4.1) Requirement already satisfied: PyYAML in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (6.0.1) Requirement already satisfied: ipython in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from execnb>=0.1.4->nbdev) (8.17.2) Requirement already satisfied: pip in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from fastcore>=1.5.27->nbdev) (23.3.1) Requirement already satisfied: packaging in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from fastcore>=1.5.27->nbdev) (23.2) Requirement already satisfied: ipykernel>=4.5.1 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipywidgets<=8.0.4->nbdev) (6.26.0) Requirement already satisfied: ipywidgets<=8.0.4 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (8.0.4) Requirement already satisfied: fastcore>=1.5.27 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (1.5.29) Requirement already satisfied: execnb>=0.1.4 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (0.1.5) Requirement already satisfied: astunparse in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (1.6.3) Requirement already satisfied: ghapi>=1.0.3 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (1.0.4) Requirement already satisfied: watchdog in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (3.0.0) Requirement already satisfied: asttokens in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (2.4.1) Requirement already satisfied: PyYAML in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from nbdev) (6.0.1) Requirement already satisfied: ipython in 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already satisfied: decorator in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (5.1.1) Requirement already satisfied: jedi>=0.16 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (0.19.1) Requirement already satisfied: prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (3.0.41) Requirement already satisfied: pygments>=2.4.0 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (2.16.1) Requirement already satisfied: stack-data in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (0.6.3) Requirement already satisfied: typing-extensions in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (4.8.0) Requirement already satisfied: exceptiongroup in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (1.1.3) Requirement already satisfied: pexpect>4.3 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (4.8.0) Requirement already satisfied: parso<0.9.0,>=0.8.3 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from jedi>=0.16->ipython->execnb>=0.1.4->nbdev) (0.8.3) Requirement already satisfied: importlib-metadata>=4.8.3 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from jupyter-client>=6.1.12->ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (6.8.0) Requirement already satisfied: python-dateutil>=2.8.2 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from jupyter-client>=6.1.12->ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (2.8.2) Requirement already satisfied: platformdirs>=2.5 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from jupyter-core!=5.0.*,>=4.12->ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (4.0.0) Requirement already satisfied: ptyprocess>=0.5 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from pexpect>4.3->ipython->execnb>=0.1.4->nbdev) (0.7.0) Requirement already satisfied: wcwidth in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30->ipython->execnb>=0.1.4->nbdev) (0.2.10) Requirement already satisfied: executing>=1.2.0 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from stack-data->ipython->execnb>=0.1.4->nbdev) (2.0.1) Requirement already satisfied: pure-eval in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from stack-data->ipython->execnb>=0.1.4->nbdev) (0.2.2) Requirement already satisfied: zipp>=0.5 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from importlib-metadata>=4.8.3->jupyter-client>=6.1.12->ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (3.17.0)' + false Requirement already satisfied: traitlets>=4.3.1 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipywidgets<=8.0.4->nbdev) (5.13.0) Requirement already satisfied: widgetsnbextension~=4.0 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipywidgets<=8.0.4->nbdev) (4.0.9) Requirement already satisfied: jupyterlab-widgets~=3.0 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipywidgets<=8.0.4->nbdev) (3.0.9) Requirement already satisfied: six>=1.12.0 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from asttokens->nbdev) (1.16.0) Requirement already satisfied: wheel<1.0,>=0.23.0 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from astunparse->nbdev) (0.41.3) Requirement already satisfied: comm>=0.1.1 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (0.2.0) Requirement already satisfied: debugpy>=1.6.5 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (1.8.0) Requirement already satisfied: jupyter-client>=6.1.12 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (8.6.0) Requirement already satisfied: jupyter-core!=5.0.*,>=4.12 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (5.5.0) Requirement already satisfied: matplotlib-inline>=0.1 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (0.1.6) Requirement already satisfied: nest-asyncio in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (1.5.8) Requirement already satisfied: psutil in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (5.9.6) Requirement already satisfied: pyzmq>=20 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (25.1.1) Requirement already satisfied: tornado>=6.1 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (6.3.3) Requirement already satisfied: decorator in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (5.1.1) Requirement already satisfied: jedi>=0.16 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (0.19.1) Requirement already satisfied: prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (3.0.41) Requirement already satisfied: pygments>=2.4.0 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (2.16.1) Requirement already satisfied: stack-data in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (0.6.3) Requirement already satisfied: typing-extensions in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (4.8.0) Requirement already satisfied: exceptiongroup in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (1.1.3) Requirement already satisfied: pexpect>4.3 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from ipython->execnb>=0.1.4->nbdev) (4.8.0) Requirement already satisfied: parso<0.9.0,>=0.8.3 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from jedi>=0.16->ipython->execnb>=0.1.4->nbdev) (0.8.3) Requirement already satisfied: importlib-metadata>=4.8.3 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from jupyter-client>=6.1.12->ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (6.8.0) Requirement already satisfied: python-dateutil>=2.8.2 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from jupyter-client>=6.1.12->ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (2.8.2) Requirement already satisfied: platformdirs>=2.5 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from jupyter-core!=5.0.*,>=4.12->ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (4.0.0) Requirement already satisfied: ptyprocess>=0.5 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from pexpect>4.3->ipython->execnb>=0.1.4->nbdev) (0.7.0) Requirement already satisfied: wcwidth in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30->ipython->execnb>=0.1.4->nbdev) (0.2.10) Requirement already satisfied: executing>=1.2.0 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from stack-data->ipython->execnb>=0.1.4->nbdev) (2.0.1) Requirement already satisfied: pure-eval in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from stack-data->ipython->execnb>=0.1.4->nbdev) (0.2.2) Requirement already satisfied: zipp>=0.5 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from importlib-metadata>=4.8.3->jupyter-client>=6.1.12->ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (3.17.0) Error: Process completed with exit code 1.
- The errors in the full error report are:
!!! Detected unstripped out notebooks
!!!Remember to run nbdev_install_hooks
+ echo -e 'This error can also happen if you are using an older version of nbdev relative to what is in CI. Please try to upgrade nbdev with the command Requirement already satisfied: nbdev in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (2.3.13)
and
Error: Process completed with exit code 1.
which always occurs right after the following line:
Requirement already satisfied: zipp>=0.5 in /opt/hostedtoolcache/Python/3.9.18/x64/lib/python3.9/site-packages (from importlib-metadata>=4.8.3->jupyter-client>=6.1.12->ipykernel>=4.5.1->ipywidgets<=8.0.4->nbdev) (3.17.0)
What I’ve tried (in no particular order)
- verifying that my local version of nbdev is up to date to match the CI version (running
pip install -U nbdev - Re-running
nbdev_install_hooksandnbdev_clean(in addition tonbdev_prepare) before pushing to gh, but this hasn’t resolved the unstripped notebook warning - Skipping all tests to simplify things
- Updating requirements in settings.ini
- Verifying that all of the packages listed in the line above the final error code are up-to-date
I think I must be misunderstanding something about how to properly configure the files for the github actions, but I’m a bit stumped in my troubleshooting at the moment.
Would be grateful for any tips on how to fix this/ steps to try next. Thanks!
Other info
Both nbdev and fastcore were installed from pip