Draw_tree in 09_tabular got truncated

huangyingw · September 18, 2020, 3:56am

see my screenshot, when I run the draw_tree cell, my output is truncated, and I don’t see any horizontal/vertical scroll bar…

huangyingw · September 18, 2020, 4:58pm

it is a little weird, my previous run was on a non-GPU machine.
this morning, I tested the same code in another GPU machine, the output works well.

and I tested again on non-GPU machine, still not works.

huangyingw · September 27, 2020, 3:29pm

I rm -fr ~/anaconda3/ folder, and re-install everything, this issue gone.

sf_chrysopylae · October 4, 2020, 11:51pm

Having the exact same problem on my desktop (which has an Nvidia RTX 2070 Super GPU, in any case, so I strongly suspect that’s not the decisive variable here). I did follow the instructions at the dtreeviz GitHub page – i.e. I uninstalled my Anaconda versions of graphviz and python-graphviz before installing the pip version of dtreeviz. Perhaps there’s something wrong with the version of graphviz used with dtreeviz?

huangyingw · October 5, 2020, 2:59am

not sure, I just checked my install shell, after rm -fr anaconda3 folder,
I run this script:

github.com

huangyingw/setup/blob/u2004/setup.sh

#!/bin/bash -
SCRIPT=$(realpath "$0")
SCRIPTPATH=$(dirname "$SCRIPT")
cd "$SCRIPTPATH"

. ./install_basic.sh
. ./install_nvidia.sh
. ./install_anaconda3.sh
export CUDA_HOME=/usr/local/cuda
export PATH="$HOME/anaconda3/bin:$PATH"
export PATH="/usr/local/bin:/opt/local/sbin:$PATH"
. ~/myproject/git/AI/fastai/fastai/install_fastai.sh
. ./install_kaggle.sh
. ./configure_jupyter.sh

and here is the install_fastai.sh

github.com

huangyingw/fastai_fastai/blob/dev/install_fastai.sh

#!/bin/bash -
SCRIPT=$(realpath "$0")
SCRIPTPATH=$(dirname "$SCRIPT")
cd "$SCRIPTPATH"

git submodule init
git submodule sync --recursive
git submodule update --recursive

conda install -c fastai -c pytorch -c anaconda fastai gh anaconda
pip install -Uqq fastbook
pip install waterfallcharts treeinterpreter dtreeviz
#pip install -e ".[dev]"
#pip install -e "fastai[dev]"

conda install -c conda-forge \
    graphviz \
    jupytext \
    neovim

from install_fastai.sh
I used pip to install dtreeviz, and later use conda to install graphviz…

there must be sth wrong in the version between this packages, but I don’t know how to fix it gracefully.
that’s as far as I could help you, and myself in future

maybe we could file an issue to dtreeviz ? so they could provide a graceful fix.
and if you found a better solution, remember to share with me.

andrewescott · November 11, 2020, 11:46am

I had the same thing happen, and a fix that I hit upon was to remove the “size=7” parameter from the function call.

Yasunori · November 29, 2020, 6:51am

Thanks, Andrew. Finally, I’ve got the right thing by dropping “size=7.”

thetj09 · December 21, 2020, 7:53pm

Spot on my friend. Thanks

thetj09 · December 21, 2020, 7:53pm

@huangyingw please accept this as the right answer. Thanks.

Zmey56 · January 29, 2021, 7:05pm

Thanks a lot!!!