I’m also interested in this area, but haven’t looked at it too closely.
Some more hands-on style resources I’ve found include notes fro a workshop held at the 2018 International Society for Computational Biology conference last year: http://snap.stanford.edu/deepnetbio-ismb/index.html
It covers a fair bit of historical ground right up to ongoing research from the presenters (Marinka Zitnik and Jure Leskovec) & others.
Here’s another presentation from Feb this year also from Jure Leskovec: http://i.stanford.edu/~jure/pub/talks2/graphsage_gin-ita-feb19.pdf
Personally I found the first batch of material impenetrably dense when I first looked at it last June, I might have another pass at it now with my brain more “in gear” 