Wiki: Lesson 1

(Rahim Shamsy) #286

About: Understanding code.

I recently came across the ‘sched’ method run on the object returned by the ConvLearner.pretrained method (the ConvLearner.pretrained method suggests that the returned object comes from a cls method:

I want to understand the method ‘sched()’ that is applied to the returned object using the cls method above. So if I were to use the ‘??’ jupyter notebook shortcut to accessing code docs, how would I reveal the ‘sched()’ method? I tried the following:

to which I get output: Object ConvLearner.pretrained.sched not found.


(Sairam) #288

Thanks Marc!

(Murali Mohana Krishna) #289

Can you let me know how are you downloading images for this exercise?

(Adam) #290

Hi, I am trying to run the code in lesson 1 and am getting a cuda error. It seems after it runs fit it is not releasing the cuda resource. So when I run the cell:

data = ImageClassifierData.from_paths(PATH, tfms=tfms_from_model(arch, sz))
learn = ConvLearner.pretrained(arch, data, precompute=True), 2)

I get the error:

RuntimeError: cuda runtime error (46) : all CUDA-capable devices are busy or unavailable at /opt/conda/conda-bld/pytorch_1518244421288/work/torch/lib/THC/generic/

How can I solve this?

(Marc Rostock) #291

Hi Adam,
Never seen this myself, but you don’t seem to be the only one with this type of error.

Maybe that helps, see last comment about switching modes of your GPU:

Other than that are you aware you are running multiple processes that use the GPU?
I am not sure what to make of this SO-Answer but maybe otherwise keep looking in that direction:

In general, just googling for your error message will often help you find the solution. It’s what I did with your message above.

(Gang Cheng) #292

This may be related to some GPU memory is consumed by supporting display, especially 4K+ monitor. You may want to separate display and computer into different cards

(Gang Cheng) #293

The image size is tied to your particular problem and the computing power you have. Large image size needs more GPUs (memory) and will be slower in training. However, if you downsize the images too much, the important features may get lost. Medical images typically need higher resolution than other samples.

(Gang Cheng) #294

This V2 is very different from V1 since it enforces more on learning the high-level picture (top-down approach) by abstracting more implementation into library. It is not a course to learn how to use TF, Keras, etc.

(Kevin Chow) #295

Is there more information (maybe a paper/post and author) about the epithelial/stroma classifier mentioned at 47:18? I’m interested in further reading about this.

(Amal) #296

How to change the batch size?
I can’t find this variable in the code!


Batch size is identified in the def get_augs() function as bs.

(Carlos Vouking) #298

You can change your batch size like so:

data = ImageClassifierData.from_paths (path, tfms=tfms, bs=30, …)

Hope this helps.

(Amal) #299

I have a question…
How could the classifier asses itself on the test set while it doesn’t know the correct answers of the test set?
I mean how could the classifier be sure that it will achieve certain accuracy 98 or 99 when it only knows the correct answers of the validation set but not the test set?

How could it be sure that it will achieve exactly the same accuracy as the validation set on the test set?

(Kofi Asiedu Brempong) #300

Hey guys, check out my first medium post, its based on an image classifier i wrote.
please let me know your thoughts


Hi everyone!

I’m having a hard time with using the library on a Linux machine (ScientificLinux7 ) I SSH to. In short: When building resnet50, the machine I SSH to is unable to locate the pre-trained model.

I set up the on the machine by following the instructions on the wiki. When I try to build the model:

PATH = 'my_data/hep_images/' sz = 300 arch = resnet50 data = ImageClassifierData.from_paths(PATH,tfms=tfms_from_model(arch, sz),bs=32 ) learn = ConvLearner.pretrained(arch, data, precompute=True)

This results in the following error:

FileNotFoundError Traceback (most recent call last)
in ()
2 arch = resnet50
3 data = ImageClassifierData.from_paths(PATH,tfms=tfms_from_model(arch, sz),bs=32 )
----> 4 learn = ConvLearner.pretrained(arch, data, precompute=True)

/mnt/scratch/eab326/fastai/courses/dl1/fastai/ in pretrained(cls, f, data, ps, xtra_fc, xtra_cut, custom_head, precompute, pretrained, **kwargs)
111 pretrained=True, **kwargs):
112 models = ConvnetBuilder(f, data.c, data.is_multi, data.is_reg,
–> 113 ps=ps, xtra_fc=xtra_fc, xtra_cut=xtra_cut, custom_head=custom_head, pretrained=pretrained)
114 return cls(data, models, precompute, **kwargs)

/mnt/scratch/eab326/fastai/courses/dl1/fastai/ in init(self, f, c, is_multi, is_reg, ps, xtra_fc, xtra_cut, custom_head, pretrained)
38 else: cut,self.lr_cut = 0,0
39 cut-=xtra_cut
—> 40 layers = cut_model(f(pretrained), cut)
41 = model_features[f] if f in model_features else (num_features(layers)*2)
42 if not custom_head: layers += [AdaptiveConcatPool2d(), Flatten()]

/mnt/scratch/eab326/anaconda3/envs/fastai/lib/python3.6/site-packages/torchvision/models/ in resnet50(pretrained, **kwargs)
186 model = ResNet(Bottleneck, [3, 4, 6, 3], **kwargs)
187 if pretrained:
–> 188 model.load_state_dict(model_zoo.load_url(model_urls[‘resnet50’]))
189 return model

/mnt/scratch/eab326/anaconda3/envs/fastai/lib/python3.6/site-packages/torch/utils/ in load_url(url, model_dir, map_location)
55 model_dir = os.getenv(‘TORCH_MODEL_ZOO’, os.path.join(torch_home, ‘models’))
56 if not os.path.exists(model_dir):
—> 57 os.makedirs(model_dir)
58 parts = urlparse(url)
59 filename = os.path.basename(parts.path)

/mnt/scratch/eab326/anaconda3/envs/fastai/lib/python3.6/ in makedirs(name, mode, exist_ok)
218 return
219 try:
–> 220 mkdir(name, mode)
221 except OSError:
222 # Cannot rely on checking for EEXIST, since the operating system

FileNotFoundError: [Errno 2] No such file or directory: ‘/home/eab326/.torch/models’

I’d appreciate any help resolving this issue. Thank you!

(Fred Guth) #302

I guess that your question got lost among others and as I didn’t see anyone answer I will try to explain (I guess you know by now, but at least it can be registered for posterity).

So, an epoch is one pass in all the training set. The batch size is how many images you analyse at once. See, images are represented as tensors (n dimensional arrays) and you can make calculations with big tensors or small tensors.

If you use big tensors it is faster because you need less computations to pass through all your data. In other words, you need less iterations to finish an epoch. But you will also need more memory to keep that big tensor (the batch) in RAM. In general, you want to keep batches as big as your GPU memory allow.

To set the batch size you can try different sizes and keep an eye in your GPU usage (nvidia-smi command). If you set it too high, your code will have a runtime error. If that happens, try to reduce the batch size.

(Shubham Gupta) #303

Hey guys, check out next part of the blog on data visualization techniques. Any suggestions, queries and comments are most welcomed.

(William Horton) #305

ConvLearner.pretrained should work in Kaggle Kernels now if you turn on the new Internet connected option. I’ve got lesson 1 running in this kernel:

(Murali Mohana Krishna) #306

Hello everybody,

I am Murali from India. I feel this course is a perfect complementary after Andrew NG’s deep learning specialization.

I started a series ‘Fast.AI Deep Learnings’ where I would like to practically implement and share my experiences about each topic.

Here is the first post

Please provide your feedback :slight_smile:

(Dov Grobgeld) #307

Just for the record, I had two problems with my computer. The first was that the PSU was broken and would crash the computer. The second was that 16GB was apparently not enough. I have now upgraded to 32GB and a got a new PSU (650W) and I can now run all the fastai exercises.